Author

Bonil Koo

Seoul National UniversityORCID 0000-0003-4357-1850Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:DNA methylation· 2 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Sun KimiD· 3 shared Dohoon LeeiD· 2 shared Jeewon YangiD· 2 shared Dabin JeongiD· 1 shared Dongmin BangiD· 1 shared Haerin SongiD· 1 shared Sangseon LeeiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 12 mutual co-author links

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3 shared papersBioinformatics

Sun KimORCID

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3 papers

Recent·Most cited

CAREPath: Semantic Context-Aware Reasoning Paths with Mechanism-Augmented Embeddings for Drug Repurposing

Haerin Song, Dongmin Bang, Bonil Koo, Sun Kim, Sangseon Lee

CAREPath improves drug repurposing by combining semantic path embeddings with mechanism-context augmentation in biomedical knowledge graphs, achieving better performance than existing methods.

Briefings in Bioinformatics · Aug 10, 2026Peer-reviewedBioinformatics

Deep learning-based survival prediction using DNA methylation-derived 3D genomic information

Jeewon Yang, Dohoon Lee, Bonil Koo, Dabin Jeong, Sun Kim

This paper develops a method to predict cancer patient survival using 3D genome-aware features derived from DNA methylation data, showing improved accuracy across seven cancer types.

ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) · Sep 3, 2023Peer-reviewedBioinformatics

Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments

Dohoon Lee, Bonil Koo, Jeewon Yang, Sun Kim

Metheor calculates DNA methylation heterogeneity from bisulfite reads, offering faster and more efficient analysis than existing tools.

PLoS Computational Biology · Mar 20, 2023Peer-reviewedBioinformatics