Author

Phoenix Logan

Chan Zuckerberg Biohub San FranciscoORCID 0000-0003-4581-0552Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Organism:human· 1 Organism:mouse· 1 Organism:multiple species· 1 Assay:proteomics· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Saba NafeesiD· 2 shared Venkata N. P. VemuriiD· 2 shared Aaron McGeeveriD· 1 shared Ahmet Can SolakiD· 1 shared C. Titus BrowniD· 1 shared Camille EzraniD· 1 shared Jianbin WangiD· 1 shared Jianwei WangiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Saba NafeesORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 14, 2022

ortho_seqs: A Python tool for sequence analysis and higher order sequence-phenotype mapping

Saba Nafees, Venkata N. P. Vemuri, Miles Woollacott…·Sean H. Rice

ortho_seqs quantifies sequence-phenotype interactions using tensor-based orthogonal polynomials, demonstrating its application to synthetic antibody sequences and other datasets.

DOI 10.1101/2022.09.14.506443

DNA methylationproteomics

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BioinformaticsbioRxivPreprintJul 9, 2021

Single-cell transcriptomics for the 99.9% of species without reference genomes

Olga Borisovna Botvinnik, Venkata N. P. Vemuri, N. Tessa Pierce‐Ward…·C. Titus Brown

This paper introduces Kmermaid and Orpheum to enable scRNA-seq analysis in species without reference genomes by detecting cell type-specific sequences without gene annotations.

7 citations

mousehuman

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