Author

Špela Baebler

National Institute of BiologyORCID 0000-0003-4776-7164Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Špela Baebler1 paper · Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia;

Biology Disciplines

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Bioinformatics· 1 Plant Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Kristina GrudeniD· 3 shared Andrej BlejeciD· 2 shared Anna ColliD· 2 shared Maja ZagorščakiD· 2 shared Živa RamšakiD· 2 shared Aleš PěnčíkiD· 1 shared Anže ŽupaničiD· 1 shared Arindam GhatakiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersPlant Biology

Kristina GrudenORCID

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3 papers

Recent·Most cited

Plant BiologyPLANT PHYSIOLOGYPeer-reviewedMar 28, 2025

Integration of multi-omics and deep phenotyping provides novel insights into multiple abiotic stress responses in potato

Maja Zagorščak, Lamis Osama Anwar Abdelhakim, Natalia Yaneth Rodriguez‐Granados…·Markus Teige

The paper integrates multi-omics and phenotyping data to identify molecular signatures of potato responses to abiotic stresses.

76 citationstop 1%

plant (other)bulk RNA-seq

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BioinformaticsScientific DataPeer-reviewedNov 10, 2022

pISA-tree - a data management framework for life science research projects using a standardised directory tree

Marko Petek, Maja Zagorščak, Andrej Blejec…·Kristina Gruden

pISA-tree organizes life science research data using a standardized directory structure based on the ISA model, enabling metadata generation and integration with bioinformatics pipelines and repositories.

3 citations

statistical modeldatabase / resource

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Systems BiologyPLANT PHYSIOLOGYPeer-reviewedJun 22, 2018

Network modelling unravels mechanisms of crosstalk between ethylene and salicylate signalling in potato

Živa Ramšak, Anna Coll, Tjaša Stare…·Kristina Gruden

The paper integrates prior knowledge and ensemble networks to reveal a novel connection between ethylene and salicylic acid signalling modules in potato.

45 citationstop 4%

Arabidopsisplant (other)

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