Indra Prakash Jha

The paper introduces NIRD, a method for inferring gene networks from sparse single-cell data, showing improved performance and consistency across datasets.

scEpiSearch enables accurate matching of single-cell open-chromatin profiles to large reference datasets, improving co-embedding and classification of epigenomic states across species and platforms.

The paper predicts gene functions using epigenomic patterns and TF binding, achieving high accuracy and validating results with CRISPR screens and PubMed data.

This paper introduces TPDS, a dimension reduction method that preserves both distance and local topology, improving classification and handling outliers in biomedical datasets.