Author

Sarah Shaw Murray

University of California San DiegoORCID 0000-0003-4997-2794Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:human· 1

Frequent Co-Authors

Benjamin P. KellmaniD· 2 shared Eric CourchesneiD· 2 shared Karen PierceiD· 2 shared Linda LopeziD· 2 shared Nathan E. LewisiD· 2 shared Srinivasa R. Nalabolu· 2 shared Tiziano PramparoiD· 2 shared Vahid GazestaniiD· 2 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Benjamin P. KellmanORCID

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2 papers

Recent·Most cited

BioinformaticsBMC GenomicsPeer-reviewedJan 21, 2021

Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing

Benjamin P. Kellman, Hratch Baghdassarian, Tiziano Pramparo…·Nathan E. Lewis

This study quantifies how repeated freeze-thaw cycles affect RNA-Seq reliability, showing that poly(A)-enriched samples lose reproducibility after three cycles.

32 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

Systems BiologyNature NeurosciencePeer-reviewedSep 23, 2019

A perturbed gene network containing PI3K/AKT, RAS/ERK, WNT/β-catenin pathways in leukocytes is linked to ASD genetics and symptom severity

Vahid Gazestani, Tiziano Pramparo, Srinivasa R. Nalabolu…·Nathan E. Lewis

The paper identifies a perturbed gene network in leukocytes linked to ASD genetics and symptom severity through analysis of transcriptomics data from toddlers.

109 citationstop 2%

humanbulk RNA-seq

𝕏 PostBluesky