Author

Jessica Martin

National Institutes of HealthORCID 0009-0000-0830-9289Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:GWAS / association mapping· 2 Approach:machine learning (classical)· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Dan VitaleiD· 2 shared Kristin S. LevineiD· 2 shared Mathew J. KoretskyiD· 2 shared Mike A. NallsiD· 2 shared Nicole KuznetsoviD· 2 shared Samantha HongiD· 2 shared Andrew SingletoniD· 1 shared Ashwin Ashok Kumar SreelathaiD· 1 shared

Activity by Year

2024-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Dan VitaleORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GenomicsG3 Genes Genomes GeneticsPeer-reviewedNov 20, 2024

GenoTools: An Open-Source Python Package for Efficient Genotype Data Quality Control and Analysis

Dan Vitale, Mathew J. Koretsky, Nicole Kuznetsov…·Mike A. Nalls

GenoTools provides a Python package for genotype data QC, ancestry estimation, and GWAS, enabling scalable and reproducible analysis of large genetic datasets.

67 citations

whole-genome sequencingwhole-exome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 23, 2024

Cluster Buster: A Machine Learning Algorithm for Genotyping SNPs from Raw Data

Jessica Martin, Nicole Kuznetsov, Kristin S. Levine…·Dan Vitale

Cluster Buster improves SNP genotyping quality by reducing no-calls and enhancing genotype accuracy for neurodegenerative disease research.

DOI 10.1101/2024.08.23.609429

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJul 2, 2024

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Vlastimil Martinek, Jessica Martin, Cédric Belair…·Manolis Maragkakis

The paper introduces RNAkinet, a deep learning model that uses nanopore sequencing to analyze RNA dynamics and cis-regulatory elements at single molecule resolution.

8 citations

long-read sequencingdeep learning

𝕏 PostBluesky