Author

Junnan Chen

Center for Life SciencesORCID 0009-0000-1548-7825Unclaimed ORCID profile · follow to get notified of new preprints

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Junnan Chen1 paper

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Guanxiang LiangiD· 2 shared Lei ZhengiD· 2 shared Bowen LiiD· 1 shared Bowen LiiD· 1 shared Hongyan GaoiD· 1 shared Siqi XuiD· 1 shared Zihan GuoiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

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7 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Guanxiang LiangORCID

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2 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedAug 20, 2025

Highly accurate prophage island detection with PIDE

Hongyan Gao, Bowen Li, Zihan Guo…·Guanxiang Liang

PIDE detects prophages in bacterial genomes and metagenomes with high accuracy using a protein language model and gene density clustering.

4 citations

bacteria (other)proteomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 12, 2024

FEDKEA: Enzyme function prediction with a large pretrained protein language model and distance-weighted k-nearest neighbor

Lei Zheng, Bowen Li, Siqi Xu…·Guanxiang Liang

FEDKEA improves enzyme function prediction by combining a pretrained protein language model with distance-weighted k-nearest neighbor, outperforming existing tools.

1 citation

protein sequencedeep learning

𝕏 PostBluesky