Lei Zheng

PIDE detects prophages in bacterial genomes and metagenomes with high accuracy using a protein language model and gene density clustering.

FEDKEA improves enzyme function prediction by combining a pretrained protein language model with distance-weighted k-nearest neighbor, outperforming existing tools.

The paper profiles RNA in brain tissue and derived extracellular vesicles from SIV-infected macaques to identify dysregulated RNAs and their potential roles in CNS pathology.

This study evaluates the impact of species and processing parameters on the recovery and content of brain tissue-derived extracellular vesicles using modified protocols.