Author

Dongwoo Kim

Seoul National UniversityORCID 0009-0000-6141-060XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1 Approach:statistical model· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Juyong LeeiD· 2 shared Byungho ParkiD· 1 shared David Hyunyoo JangiD· 1 shared Kyunghwan YeoiD· 1 shared sim jaeminiD· 1 shared Yoonjoo ChoiiD· 1 shared 황운택· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 13 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Juyong LeeORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 6, 2026

PREpiBind: Protein Representation-integrated Epitope-MHC Class II Binding Prediction

David Hyunyoo Jang, 황운택, Dongwoo Kim…·Juyong Lee

PREpiBind evaluates ten protein representations for pMHC-II binding prediction across multiple datasets, showing varying performance depending on the task and evaluation method.

DOI 10.64898/2026.09.15.751749

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 18, 2026

LEN-Seek: Fast and scalable ligand binding-site similarity search in the latent space of an SE(3)-invariant graph VAE

Kyunghwan Yeo, Dongwoo Kim, sim jaemin, Juyong Lee

LEN-Seek is a method for ligand binding-site similarity search using a graph VAE that encodes structural information into a latent space, achieving faster and more scalable results than existing methods.

DOI 10.64898/2026.08.14.744759

protein structurevariational autoencoder

𝕏 PostBluesky