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ARGformer uses transformers to learn embeddings from ancestral recombination graphs, enabling population structure analysis and ancestry inference without genotype data.

ARGMix uses a graph transformer to infer local ancestry from ancient DNA, showing continuity between Otzi the Iceman and present-day Europeans.

snputils provides a high-performance Python library for handling genetic variation and population structure data, improving efficiency and integration in genomic research.

PopGenAdapt improves genotype-to-phenotype prediction in underrepresented populations using semi-supervised domain adaptation, outperforming supervised methods in Nigerian, Sri Lankan, and Hawaiian populations.