Author

Selvakumar Kamatchinathan

European Bioinformatics InstituteORCID 0009-0001-3644-2586Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Assay:proteomics· 3 Approach:benchmark study· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Yasset Pérez‐RiveroliD· 3 shared Chakradhar BandlaiD· 2 shared Chengxin DaiiD· 2 shared Deepti J KunduiD· 2 shared Henry Emanuel WebeliD· 2 shared Juan Antonio VizcaínoiD· 2 shared Julian UszkoreitiD· 2 shared Oliver KohlbacheriD· 2 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersBioinformatics

Yasset Pérez‐RiverolORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 23, 2026

Quantifying data reuse in proteomics using PRIDE downloads statistics and a semi-supervised LLM-based framework

Suresh Hewapathirana, Jingwen Bai, Chakradhar Bandla…·Yasset Pérez‐Riverol

The paper analyzes proteomics dataset reuse using PRIDE download statistics and a semi-supervised LLM-based framework to classify download sources.

DOI 10.64898/2026.04.16.718670

proteomicsmachine learning (classical)

𝕏 PostBluesky

BioinformaticsMolecular & Cellular ProteomicsPeer-reviewedFeb 18, 2026

pmultiqc: An open-source, lightweight, and metadata-oriented QC reporting library for MS proteomics

Qi-Xuan Yue, Chengxin Dai, Selvakumar Kamatchinathan…·Yasset Pérez‐Riverol

pmultiqc generates metadata-aware QC reports for proteomics data using standardized metrics and integrates with existing workflows and cloud services.

5 citationstop 2%

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsNature CommunicationsPeer-reviewedOct 6, 2021

A proteomics sample metadata representation for multiomics integration, and big data analysis.

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer…·Yasset Pérez‐Riverol

The paper introduces a standardized metadata format for proteomics datasets to improve reusability and integration across public repositories.

125 citations

proteomicsstatistical model

𝕏 PostBluesky