Author

Xu Yang

Tencent (China)ORCID 0009-0001-4517-3648Unclaimed ORCID profile · follow to get notified of new preprints

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Xu yang1 paper · Guizhou University

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Organism:human· 1 Approach:large language model· 1

Frequent Co-Authors

Yanlin ZhangiD· 2 shared Bing HeiD· 1 shared Chenchen QiniD· 1 shared Chengrui WangiD· 1 shared Fang Wang· 1 shared Haojie LuiD· 1 shared Houcheng SuiD· 1 shared Jianhua YaoiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenomics

Yanlin ZhangORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 12, 2026

Alignment-Aware Genomic Coordinate Encoding for Long-Range DNA Modeling

Xu Yang, Chenchen Qin, Fang Wang…·Jianhua Yao

This paper introduces USM-AA, an alignment-aware genomic foundation model that improves long-range DNA modeling by incorporating reference genome coordinates and reverse-complement masked learning.

DOI 10.64898/2026.10.10.757278

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsPatternsPeer-reviewedAug 14, 2026

BioMaster: Multi-agent System for Automated Bioinformatics Analysis Workflow

Houcheng Su, Junning Feng, Yawen Lu…·Yanlin Zhang

BioMaster automates complex bioinformatics workflows using a multi-agent system, improving accuracy, efficiency, and scalability across tasks like RNA-seq and Hi-C processing.

3 citationstop 1%

bulk RNA-seqChIP-seq

𝕏 PostBluesky