Author

Wenqi Dong

McGill UniversityORCID 0009-0001-5226-648XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:snRNA-seq· 1 Assay:spatial transcriptomics· 1

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Adrien OsakweiD· 1 shared Qihuang ZhangiD· 1 shared ROBERT M. SLADEKiD· 1 shared Yue LiiD· 1 shared

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2025-2025 · peak 1/yr

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1 shared paperBioinformatics

Adrien OsakweORCID

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1 paper

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BioinformaticsBriefings in BioinformaticsPeer-reviewedNov 1, 2025

SpaTM: Topic Models for Inferring Spatially Informed Transcriptional Programs

Adrien Osakwe, Wenqi Dong, Qihuang Zhang…·Yue Li

SpaTM is a topic modeling framework for spatial transcriptomics data that supports both annotation-guided and annotation-free analysis, showing competitiveness in spatial label prediction and clustering.

3 citations

humanspatial transcriptomics

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