Author

Prakyat Prakash

Rochester Institute of TechnologyORCID 0009-0001-5713-1306Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Feng CuiiD· 2 shared Image AdhikariiD· 2 shared Joseph R. Pizzi· 2 shared Christopher W CarsoniD· 1 shared Hangchuan ShiiD· 1 shared Hiroshi MiyamotoiD· 1 shared Julia M. Freewoman· 1 shared Sheethal Umesh NagalakshmiiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Feng CuiORCID

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedJun 13, 2026

Intrinsic DNA codes govern distinct modes of nucleosome-transcription factor interactions

Christopher W Carson, Sheethal Umesh Nagalakshmi, Image Adhikari…·Feng Cui

The paper identifies four nucleosomal DNA classes and shows their association with TF binding, revealing DNA-encoded codes for nucleosome positioning and interaction modes.

DOI 10.1038/s41467-026-74448-4

humanmultiple species

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BioinformaticsFrontiers in BioinformaticsPeer-reviewedApr 29, 2026

Machine-learning-based determination of sex-related bladder cancer biomarkers

Joseph R. Pizzi, Image Adhikari, Prakyat Prakash…·Feng Cui

This study uses machine learning on RNA-seq data to identify sex-specific gene panels for bladder cancer biomarkers, achieving high accuracy in distinguishing cancer from non-tumor samples.

DOI 10.3389/fbinf.2026.1794098

humanbulk RNA-seq

𝕏 PostBluesky