Author

Jonathan Kirkland

University of California San DiegoORCID 0009-0001-6633-1844Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Benjamin WerneriD· 1 shared Bhargavi DameracharlaiD· 1 shared Gino PrasadiD· 1 shared Jens LuebeckiD· 1 shared Lukas CháveziD· 1 shared Owen S. ChapmaniD· 1 shared Paul S. MischeliD· 1 shared Roel G.W. VerhaakiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Benjamin WernerORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintOct 11, 2026

Inferring ecDNA Evolution from Allele Frequency Spectra

Bhargavi Dameracharla, Gino Prasad, Jens Luebeck…·Vineet Bafna

This paper introduces ecEvol, a method to infer ecDNA emergence time and other parameters from bulk whole-genome sequencing data, finding that ecDNA typically emerges early and is associated with poorer survival.

DOI 10.64898/2026.10.09.758054

humanwhole-genome sequencing

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