Author

Bhargavi Dameracharla

University of California San DiegoORCID 0000-0001-5001-5057Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Gino PrasadiD· 2 shared Jens LuebeckiD· 2 shared Paul S. MischeliD· 2 shared Roel G.W. VerhaakiD· 2 shared Vineet BafnaiD· 2 shared Benjamin WerneriD· 1 shared Daniel SchreyeriD· 1 shared Devika Torvi· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Gino PrasadORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 11, 2026

Inferring ecDNA Evolution from Allele Frequency Spectra

Bhargavi Dameracharla, Gino Prasad, Jens Luebeck…·Vineet Bafna

This paper introduces ecEvol, a method to infer ecDNA emergence time and other parameters from bulk whole-genome sequencing data, finding that ecDNA typically emerges early and is associated with poorer survival.

DOI 10.64898/2026.10.09.758054

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintMay 6, 2024

AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes

Jens Luebeck, Edwin Huang, Forrest Kim…·Vineet Bafna

AmpliconSuite identifies focal amplifications in cancer genomes, showing ecDNA has higher copy numbers and stronger oncogene enrichment compared to other amplification types.

30 citations

whole-genome sequencingstatistical model

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