Author

Yingjie Xu

University of Tennessee at KnoxvilleORCID 0009-0001-8878-8765Unclaimed ORCID profile · follow to get notified of new preprints

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Yingjie Xu1 paper · Hong Kong University of Science and Technology

Biology Disciplines

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Biophysics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:Hi-C· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Rachel Patton McCordiD· 2 shared Tongye SheniD· 2 shared Ian Jacob Anderson· 1 shared Priyojit DasiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

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4 top collaborators · 5 mutual co-author links

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2 shared papersGenomics

Rachel Patton McCordORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintJun 26, 2026

Visualizing Interchromosomal Interactions at Sub-Megabase Resolution Using Network Clustering Coefficients

Yingjie Xu, Ian Jacob Anderson, Rachel Patton McCord, Tongye Shen

The paper develops network-based metrics to visualize interchromosomal interactions at sub-megabase resolution, revealing shared interaction hotspots across chromosomes.

DOI 10.64898/2026.01.29.702487

𝕏 PostBluesky

BiophysicsComputational and Structural Biotechnology JournalPeer-reviewedMay 17, 2024

Node Features of Chromosome Structure Network and Their Connections to Genome Annotation

Yingjie Xu, Priyojit Das, Rachel Patton McCord, Tongye Shen

The paper investigates network properties of chromosome structure networks derived from Hi-C data and their connections to genome annotations, finding that semi-local properties better characterize biological features than local or diffusive features.

2 citations

Hi-Cstatistical model

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