Author

Jeanine Liebold

Universität HamburgORCID 0009-0002-0797-1806Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:protein structure· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:human· 1 Approach:large language model· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Jan BaumbachiD· 3 shared Stefan KurtziD· 3 shared Khalique NewaziD· 2 shared Aylin Del Moral‐MoralesiD· 1 shared Fabian NeuhausiD· 1 shared Gary D. BaderiD· 1 shared Jan-Ole SchulzeiD· 1 shared Janina GeiseriD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBioinformatics

Jan BaumbachORCID

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Author profile →

3 papers

Recent·Most cited

CyChat: a conversational Cytoscape app for no-code, reproducible network analysis

Jeanine Liebold, Merle Stahl, Jan-Ole Schulze, Mohammad Mehdi Razavi, Gary D. Bader, Stefan Kurtz, Jan Baumbach

CyChat is a Cytoscape app that translates natural language into reproducible network analysis workflows using a large language model, reducing the need for programming expertise.

bioRxiv · Sep 1, 2026 · PreprintBioinformatics

Transcription factor prediction using protein 3Dsecondary structures

Jeanine Liebold, Fabian Neuhaus, Janina Geiser, Stefan Kurtz, Jan Baumbach, Khalique Newaz

The paper introduces a deep learning method, StrucTFactor, that uses 3D protein structures to predict transcription factors, outperforming existing methods by 17% in Matthews correlation coefficient.

Bioinformatics · Dec 26, 2024Peer-reviewedBioinformatics

The power and limits of predicting exon-exon interactions using protein 3D structures

Jeanine Liebold, Aylin Del Moral‐Morales, Karen Manalastas-Cantos, Olga V. Tsoy, Stefan Kurtz, Jan Baumbach, Khalique Newaz

The paper evaluates existing computational methods for predicting exon-exon interactions using protein structures and finds they can achieve moderate accuracy for this task.

bioRxiv · Mar 1, 2024 · PreprintBioinformatics