Author

Merle Stahl

Technical University of MunichORCID 0009-0005-8652-2356Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:dimensionality reduction· 1 Approach:large language model· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Chit Tong LioiD· 1 shared Gary D. BaderiD· 1 shared Jan BaumbachiD· 1 shared Jan-Ole SchulzeiD· 1 shared Jeanine LieboldiD· 1 shared Judith BernettiD· 1 shared Lena J. StraßeriD· 1 shared Markus ListiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Chit Tong LioORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 1, 2026

CyChat: a conversational Cytoscape app for no-code, reproducible network analysis

Jeanine Liebold, Merle Stahl, Jan-Ole Schulze…·Jan Baumbach

CyChat is a Cytoscape app that translates natural language into reproducible network analysis workflows using a large language model, reducing the need for programming expertise.

DOI 10.64898/2026.08.28.747833

large language modelsoftware / tool

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJul 1, 2025

Refinement Strategies for Tangram for Reliable Single-Cell to Spatial Mapping

Merle Stahl, Lena J. Straßer, Chit Tong Lio…·Markus List

This paper refines the Tangram spatial mapping tool to improve consistency and reliability in mapping single-cell RNA-seq data to spatial transcriptomics data.

5 citations

mousescRNA-seq

𝕏 PostBluesky