Author

Deniz Konak

Gebze Technical UniversityORCID 0009-0002-4460-2858Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:machine learning (classical)· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:trajectory inference· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

Pınar PiriD· 2 shared Gulnur UzuniD· 1 shared Hilal KazaniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBioinformatics

Pınar PirORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 21, 2026

A transcriptional continuum from clinically normal to lesional skin: Single-cell trajectory analysis of psoriasis

Gulnur Uzun, Deniz Konak, Hilal Kazan, Pınar Pir

The paper identifies a transcriptional continuum from normal to lesional skin in psoriasis using single-cell RNA sequencing and trajectory analysis, revealing cell-type-specific state transitions.

DOI 10.64898/2026.09.15.751704

humanscRNA-seq

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BioinformaticsbioRxivPreprintSep 1, 2026

Basophilic Erythroblast Emerges as the Key Turning Point in Polycythemia Vera

Deniz Konak, Pınar Pir

The paper identifies basophilic erythroblasts as the critical stage in polycythemia vera where the JAK2V617F mutation becomes transcriptionally active and treatment-responsive.

DOI 10.64898/2026.09.01.748468

humanscRNA-seq

𝕏 PostBluesky