Author

Md. Hasin Abrar

Pennsylvania State UniversityORCID 0009-0002-5265-3364Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Md. Hasin Abrar1 paper · Bangladesh University of Engineering and Technology

Biology Disciplines

Click to filter author papers

Bioinformatics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Paul MedvedeviD· 3 shared Adrita Hossain Nakshi· 1 shared David KoslickiiD· 1 shared Giorgio VinciguerraiD· 1 shared Haonan WuiD· 1 shared Mohammad Mohsen Hajari Taheri· 1 shared Rayan ChikhiiD· 1 shared Roland FaureiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Paul MedvedevORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Sketching the SRA: experiment-wide similarity search across 4.8 million metagenomes

Roland Faure, Adrita Hossain Nakshi, Md. Hasin Abrar, Rayan Chikhi, Téo Lemane, Mohammad Mohsen Hajari Taheri, Stephanie Won, Haonan Wu, David Koslicki, Paul Medvedev

The paper introduces resources for large-scale metagenome comparison in the SRA, revealing trends in microbial discovery and improving assembly quality.

bioRxiv · Oct 8, 2026 · PreprintBioinformatics

Efficiency of Learned Indexes on Genome Spectra

Md. Hasin Abrar, Paul Medvedev, Giorgio Vinciguerra

The paper introduces CaPLa, a measure to predict the performance of learned indexes on genomic k-mer data, showing it varies across genomes and can predict space bounds.

bioRxiv · Jul 10, 2025 · PreprintBioinformatics

PLA-complexity of k-mer multisets

Md. Hasin Abrar, Paul Medvedev

The paper introduces PLA-complexity as a measure of k-mer multiset structure and presents PLA-index for efficient approximation and querying of rank functions in genomic data.

bioRxiv · Feb 8, 2024 · PreprintBioinformatics