Author

Sakshar Chakravarty

University of California, RiversideORCID 0009-0002-6002-5229Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:genome assembly· 1 Research Focus:GWAS / association mapping· 1 Assay:GWAS summary statistics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Acramul Haque KabiriD· 1 shared Atif Hasan RahmaniD· 1 shared Glennis A. LogsdoniD· 1 shared Md. Shamsuzzoha BayzidiD· 1 shared Nilanjan RoyiD· 1 shared Nourin Zahan· 1 shared Shahba Tasmiya Mouna· 1 shared Stefano LonardiiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Acramul Haque KabirORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Genome Wide Association Studies on 7 Yield-related Traits of 183 Rice Varieties in Bangladesh

Nilanjan Roy, Acramul Haque Kabir, Nourin Zahan, Shahba Tasmiya Mouna, Sakshar Chakravarty, Atif Hasan Rahman, Md. Shamsuzzoha Bayzid

This study conducts GWAS on 7 yield-related traits in 183 Bangladeshi rice landraces, identifying chromosomal regions and genes associated with grain shape and leaf traits.

Plant Direct · Jun 1, 2024Peer-reviewedBioinformatics

RAmbler: de novo genome assembly of complex repetitive regions

Sakshar Chakravarty, Glennis A. Logsdon, Stefano Lonardi

RAmbler improves de novo genome assembly of complex repetitive regions using high-quality long reads, outperforming existing tools on synthetic and real data.

bioRxiv · May 26, 2023 · PreprintBioinformatics