Author

Alper Yurtseven

Helmholtz Centre for Infection ResearchORCID 0009-0002-8133-9403Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

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Approach:machine learning (classical)· 2 Research Focus:variant effect prediction· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Olga V. KalininaiD· 2 shared Amay Ajaykumar AgrawaliD· 1 shared Olga BochkarevaiD· 1 shared Roman JoeresiD· 1 shared Sofia Buyanova· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 7 mutual co-author links

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2 shared papersBioinformatics

Olga V. KalininaORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJul 21, 2026

ALPAR: Automated Learning Pipeline for Antimicrobial Resistance

Alper Yurtseven, Roman Joeres, Olga V. Kalinina

ALPAR automates AMR data analysis from genomic data processing to ML model training and GWAS, offering a reproducible pipeline for single-reference AMR studies.

DOI 10.1093/bioinformatics/btag545

whole-genome sequencingmachine learning (classical)

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 6, 2023

Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis

Alper Yurtseven, Sofia Buyanova, Amay Ajaykumar Agrawal…·Olga V. Kalinina

The paper introduces a phylogeny-related parallelism score to improve machine learning prediction of antibiotic resistance in M. tuberculosis by incorporating evolutionary relationships.

DOI 10.1101/2023.09.06.556328

humanwhole-genome sequencing

𝕏 PostBluesky