Author

Akmuhammet Ashyralyyev

Bilkent UniversityORCID 0009-0002-8669-8333Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:graph neural network· 1 Organism:non-human primate· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Can AlkaniD· 2 shared Ege Sirvan· 1 shared Muti KaraiD· 1 shared S. Cenk ŞahinalpiD· 1 shared Salem MalikićiD· 1 shared Tuğkan BatuiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

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2 shared papersGenomics

Can AlkanORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Somatic structural variation discovery on cancer pangenome graphs

Muti Kara, Akmuhammet Ashyralyyev, Can Alkan

JANUS discovers somatic structural variants in cancer genomes using a pangenome graph approach, achieving high accuracy and efficiency compared to traditional methods.

bioRxiv · Nov 6, 2026 · PreprintGenomics

GenCore: Genomic distance estimation using Locally Consistent Parsing

Akmuhammet Ashyralyyev, Ege Sirvan, Salem Malikić, Tuğkan Batu, S. Cenk Şahinalp, Can Alkan

GenCore uses Locally Consistent Parsing to sketch and estimate genomic distances between closely related large genomes, successfully reconstructing simulated progression trees and recapitulating primate phylogeny.

bioRxiv · Jul 10, 2026 · PreprintBioinformatics