Author

Shahak Kuba

Queensland University of TechnologyORCID 0009-0002-9006-9863Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Matthew J. SimpsoniD· 2 shared Pascal R. BuenzliiD· 2 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

2 top collaborators · 1 mutual co-author link

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2 shared papersBiophysics

Matthew J. SimpsonORCID

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2 papers

Recent·Most cited

BiophysicsJournal of Theoretical BiologyPeer-reviewedSep 11, 2026

Emergence of curvature-dependent tissue growth from cell crowding and mechanical interactions

Shahak Kuba, Matthew J. Simpson, Pascal R. Buenzli

This study develops a mathematical model to show how curvature-dependent tissue growth arises from cell crowding and mechanical interactions, predicting pore closure scaling with size and shape.

1 citation

statistical model

𝕏 PostBluesky

BioengineeringbioRxivPreprintMar 16, 2026

Mechanistic interpretation of biological tissue growth experiments with a computational model

Shahak Kuba, Matthew J. Simpson, Pascal R. Buenzli

This paper presents a computational model to simulate tissue growth by integrating geometry, mechanics, and stochastic processes, demonstrating its application to 3D-printed scaffolds and bone formation in cortical pores.

1 citation

deep learningstatistical model

𝕏 PostBluesky