Author

Luqi Yang

Shanghai Jiao Tong UniversityORCID 0009-0003-0960-3246Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Hongyi XiniD· 2 shared Jinpu CaiiD· 2 shared Cheng Wang· 1 shared Yuhan CheniD· 1 shared Yuxuan WangiD· 1 shared Zhenwei HuangiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 12 mutual co-author links

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2 shared papersBioinformatics

Hongyi XinORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 2, 2026

Benchmarking niche identification via domain segmentation for spatial transcriptomics data

Yuxuan Wang, Yuhan Chen, Luqi Yang…·Hongyi Xin

The paper benchmarks domain segmentation algorithms for spatial transcriptomics data, showing they fail to identify biologically defined niches due to noise and highlights the need for specialized methods.

DOI 10.64898/2026.02.27.708202

humanspatial transcriptomics

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BioinformaticsbioRxivPreprintApr 24, 2026

Gene-First Identity Construction for Robust Cell Identification in Single-Cell Transcriptomics

Luqi Yang, Zhenwei Huang, Jinpu Cai, Hongyi Xin

This paper introduces GeCCo, a method for cell type identification in single-cell transcriptomics that improves hierarchical consistency by constructing identities based on gene programs.

DOI 10.64898/2026.02.25.707869

humanscRNA-seq

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