Author
University of Maryland, BaltimoreORCID 0009-0003-2152-6853Unclaimed ORCID profile · follow to get notified of new preprints
7 papers
Recent·Most cited
María Sol Recouvreux, Kathleen Trang, Alexandra Smick…·Sandra Oršulić
This study uses spatial transcriptomics to analyze fallopian tube lesions and identifies immune and stromal changes associated with early ovarian cancer development.
Dmitrijs Lvovs, Jeffrey Quinn, André Forjaz…·Elana Judith Fertig
STAPLE automates spatial transcriptomics analysis by integrating multiple tools into a modular framework and provides AI-driven interpretation of results.
André Forjaz, Hengameh Mojdeganlou, Alens Valentin…·Laura DeLong Wood
The paper develops a 3D multi-omic pipeline using deep learning to analyze chemotherapy response in pancreatic cancer, identifying molecular signatures of resistance and fibroblast-cancer interactions.
Jacob T. Mitchell, Orian Stapleton, Kavita Krishnan…·Elana Judith Fertig
The paper introduces dominoSignal, a software tool that statistically tests differential cell signaling from single-cell data to infer changes in cell-cell communication networks.
Ruizhe Chen, Yu-Che Chung, Beth Kelly…·David E. Sanin
The paper identifies transcriptional shifts by analyzing missing data patterns in single-cell transcriptomes, revealing a metabolic shift in D. discoideum.
André Forjaz, Valentina Matos-Romero, Ian Reucroft…·Ashley L. Kiemen
PIVOT is an open-source tool for nonlinear registration of multi-omic spatial data, demonstrating improved throughput compared to existing workflows.
Dimitrios N. Sidiropoulos, Sarah M. Shin, Meredith Wetzel…·Luciane Tsukamoto Kagohara
This study uses spatial multi-omics to identify TLS-associated immune niches in PDAC that correlate with improved survival in immunotherapy responders.