Author

Timothé Rouzé

Institut PasteurORCID 0009-0004-2799-6714Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Approach:statistical model· 3 Research Focus:database / resource· 2 Research Focus:software / tool· 2 Organism:bacteria (other)· 1 Research Focus:dimensionality reduction· 1 Assay:metagenomics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Antoine LimassetiD· 3 shared Camille MarchetiD· 1 shared Etienne Conchon-Kerjan· 1 shared Florian IngelsiD· 1 shared Igor MartayaniD· 1 shared Lucas RobidouiD· 1 shared Rayan ChikhiiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 10 mutual co-author links

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3 shared papersBioinformatics

Antoine LimassetORCID

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3 papers

Recent·Most cited

BioinformaticsJournal of Computational BiologyPeer-reviewedOct 7, 2026

Super Bloom: Fast and precise filter for streaming k-mer queries

Etienne Conchon-Kerjan, Timothé Rouzé, Lucas Robidou…·Antoine Limasset

The paper introduces Super Bloom, a Bloom filter variant for streaming k-mer queries, which improves cache efficiency and reduces false positives.

DOI 10.1177/15578666261493564

metagenomicsstatistical model

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BioinformaticsbioRxivPreprintDec 10, 2025

Inverted colored de Bruijn Graph for practical kmer sets storage

Timothé Rouzé, Rayan Chikhi, Antoine Limasset

The paper introduces kloe, a compression method for k-mer multi-sets that enables targeted decompression of specific samples' k-mer content.

DOI 10.64898/2025.12.08.692073

statistical modeldatabase / resource

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BioinformaticsbioRxivPreprintJun 21, 2023

Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching

Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset

This paper introduces a new sketching method for genomic data that reduces space and memory usage while maintaining efficiency and accuracy compared to existing tools.

3 citations

bacteria (other)whole-genome sequencing

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