Author

Yueqian Deng

Baylor College of MedicineORCID 0009-0004-4636-8019Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Athanasios Papastathopoulos-KatsarosiD· 1 shared David L. BartlettiD· 1 shared Ilia BuralkiniD· 1 shared Jorge BotasiD· 1 shared Junseok ParkiD· 1 shared Kai-Li ChangiD· 1 shared Russell S. SchwartziD· 1 shared William A. LaFramboiseiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Athanasios Papastathopoulos-KatsarosORCID

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2 papers

Recent·Most cited

Vision-Based Genomic Model for Copy Number Variant Pathogenicity Prediction

Ilia Buralkin, Jorge Botas, Kai-Li Chang, Yueqian Deng, Athanasios Papastathopoulos-Katsaros, Zhandong Liu, Junseok Park

This paper introduces a vision-based model for predicting CNV pathogenicity using track-based spatial representations, achieving improved performance on benchmarks and clinical datasets.

bioRxiv · May 26, 2026 · PreprintBioinformatics

Marker selection strategies for circulating tumor DNA guided by phylogenetic inference

Xuecong Fu, Zhicheng Luo, Yueqian Deng, William A. LaFramboise, David L. Bartlett, Russell S. Schwartz

The paper develops methods to improve marker selection for ctDNA analysis by refining phylogenetic models and quantifying clonal frequencies through optimization.

Bioinformatics · Mar 29, 2025Peer-reviewedBioinformatics