Author

Daniel Kacsor

Tallinn University of TechnologyORCID 0009-0004-7904-8791Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:imaging· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Merili Saar-Abroi· 2 shared Ott ScheleriD· 2 shared Simona BartkovaiD· 2 shared Triini OlmaniD· 2 shared David Gonzalez· 1 shared Fenella Lucia Sulp· 1 shared Immanuel SankaiD· 1 shared Karoliine Lindpere· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Merili Saar-Abroi

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2 papers

Recent·Most cited

BioinformaticsScientific ReportsPeer-reviewedDec 2, 2025

High-throughput bacterial aggregation analysis in droplets

Merili Saar-Abroi, Karoliine Lindpere, Daniel Kacsor…·Ott Scheler

This paper develops an open-source image analysis pipeline using texture-based methods to assess bacterial aggregation in microfluidic droplets, achieving high accuracy and broad applicability.

2 citations

bacteria (other)imaging

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 4, 2025

Label-free droplet image analysis with Cellprofiler

Daniel Kacsor, Merili Saar-Abroi, Triini Olman…·Ott Scheler

The paper presents a label-free image analysis pipeline using Cellprofiler to identify microfluidic droplets, microplastic particles, and bacterial growth without fluorescent labels.

DOI 10.1101/2025.04.04.647160

imagingstatistical model

𝕏 PostBluesky