Author

Yuyang Zhou

Westlake UniversityORCID 0009-0004-8600-6100Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Research Focus:software / tool· 1 Approach:transformer / foundation model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Chenchen HaniD· 1 shared Fajie YuaniD· 1 shared Jin SuiD· 1 shared Junjie Shan· 1 shared Xibin ZhouiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Chenchen HanORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintOct 1, 2023

✦ In-depth digest

SaProt: Protein Language Modeling with Structure-aware Vocabulary

Jin Su, Chenchen Han, Yuyang Zhou…·Fajie Yuan

Pairing each residue with its Foldseek 3D-structure token and pre-training an ESM-2-sized model on about 40 million AlphaFold2 structures beat ESM-2 and structure-based baselines on variant-effect and function tasks.

244 citations

protein sequenceprotein structure

𝕏 PostBluesky