Author

Ying Xu

UNSW SydneyORCID 0009-0004-9697-7023Unclaimed ORCID profile · follow to get notified of new preprints

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Ying Xu6 papers · Changchun University of Technology

Biology Disciplines

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Cell Biology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:human· 1

Frequent Co-Authors

Fabio ZaniniiD· 2 shared Catherine GattiD· 1 shared Esra KaymakiD· 1 shared Joanna AhniD· 1 shared Kensei KikuchiiD· 1 shared Thomas BourguignoniD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

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2 shared papersEvolutionary Biology

Fabio ZaniniORCID

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2 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintFeb 19, 2025

Exploration and generation of cell transcriptomes over deep evolutionary time

Ying Xu, Catherine Gatt, Esra Kaymak…·Fabio Zanini

The paper develops a computational strategy to compare cell atlases across species, trains a universal model for cell type annotation, and generates synthetic cell atlases for extinct species.

DOI 10.1101/2025.02.19.639005

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Cell BiologybioRxivPreprintJan 3, 2024

Fast and lightweight cell atlas approximations across organs and organisms

Ying Xu, Joanna Ahn, Fabio Zanini

This paper introduces a computational approach for fast, scalable, and accessible exploration of cell atlases across species using a web interface and APIs.

1 citation

multiple speciesscRNA-seq

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