Author

Qile Yang

University of California, BerkeleyORCID 0009-0005-0148-2499Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Kieu Diem Quynh Nguyen· 1 shared Ksenia R. SafinaiD· 1 shared Nicholas C. BorcherdingiD· 1 shared Zewen Kelvin TuongiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperImmunology

Kieu Diem Quynh Nguyen

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1 paper

Recent·Most cited

ImmunologyPLoS Computational BiologyPeer-reviewedJun 27, 2025

✦ In-depth digest

scRepertoire 2: Enhanced and Efficient Toolkit for Single-Cell Immune Profiling

Qile Yang, Ksenia R. Safina, Kieu Diem Quynh Nguyen…·Nicholas C. Borcherding

R package rebuild for single-cell T/B cell receptor analysis: Rcpp rewrites reportedly make clonal pairing and edit-distance clustering scale linearly; adds auto-detected multi-format import, AIRR-compatible export, CDR3 summaries.

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humanscRNA-seq

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