Author

Samantha Pattey

University of FloridaORCID 0009-0005-1790-3497Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

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John LearyiD· 1 shared Rhonda L. BacheriD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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1 shared paperGenomics

John LearyORCID

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1 paper

Recent·Most cited

GenomicsbioRxivPreprintJul 30, 2026

LLM-powered Functional Gene Set Summarization with genesetGPT

John Leary, Samantha Pattey, Rhonda L. Bacher

genesetGPT is an LLM-based framework that improves gene set annotation by using curated biological context and iterative prompt design to summarize heterogeneous gene sets.

DOI 10.64898/2026.07.27.741117

bulk RNA-seqspatial transcriptomics

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