Pankaj Bhattarai

OncoSpot benchmarks cancer spatial transcriptomics methods across tumor evolutionary modes by simulating realistic cancer data with known subclonal and copy-number features.

DeepMalignant identifies malignant cells in scRNA-seq data by integrating gene expression and CNA, outperforming existing methods across multiple cancer types and platforms.

scLongTree infers subclonal trees from longitudinal scDNA-seq data, outperforming existing tools in accuracy and scalability.