Author

Qishi Dong

Shenzhen Technology UniversityORCID 0009-0005-6994-598XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:CUT&Tag· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Chaoxin ZhengiD· 1 shared D.F. ZhangiD· 1 shared Doudou ZhouiD· 1 shared Lixin LiangiD· 1 shared MingShen ZhangiD· 1 shared Nuo Li· 1 shared Shiyang MaiD· 1 shared Shucun Xiong· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Chaoxin ZhengORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 15, 2026

Deciphering Spatial Cellular Organization through RNA-Anchored Multi-Omics Deconvolution

Yihao Bai, Xingbo Guan, Shucun Xiong…·wei liu

SMODER deconvolves spatial multi-omics data by prioritizing RNA for cell-type identification and integrating other modalities, improving accuracy and spatial coherence.

DOI 10.64898/2026.10.09.757940

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 13, 2026

EnsAgent: a tool-ensemble multiple Agent system for robust annotation in spatial transcriptomics

D.F. Zhang, MingShen Zhang, Nuo Li…·Qishi Dong

EnsAgent improves spatial transcriptomics annotation by integrating multiple agents for robust, evidence-based labeling across datasets.

DOI 10.64898/2026.03.10.710824

spatial transcriptomicsdeep learning

𝕏 PostBluesky