Author

Alexey Shkarin

Max Planck Institute for the Science of LightORCID 0009-0005-7081-643XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Assay:fluorescence / live-cell microscopy· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Anna D. KashkanovaiD· 1 shared Arif B. EkiciiD· 1 shared Catherine K. XuiD· 1 shared Christine Schweitzer· 1 shared Fabian Joachim TheisiD· 1 shared Georg MeisliD· 1 shared Hamed Qazvini· 1 shared Hannarae Lee· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBiophysics

Anna D. KashkanovaORCID

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintApr 13, 2026

Characterization of Nanoparticles in Suspension by Simultaneous iNTA and Fluorescence Detection with Single-Molecule Sensitivity

Shuhan Jiang, Anna D. Kashkanova, Hannarae Lee…·Vahid Sandoghdar

This paper introduces iNTA-F, a method combining interferometric nanoparticle tracking analysis with fluorescence detection to characterize nanoparticles with single-molecule sensitivity.

DOI 10.64898/2026.04.09.717488

imagingfluorescence / live-cell microscopy

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 1, 2025

Im-seq: Multimodal droplet barcoding enables high-throughput linking of single-cell imaging and gene expression

Catherine K. Xu, Georg Meisl, Nikita Moshkov…·Jochen R. Guck

The paper introduces a method to link single-cell imaging and gene expression data through multimodal droplet barcoding, identifying genes correlated with phenotypic features.

1 citation

spatial transcriptomicsimaging

𝕏 PostBluesky