Author

Gabriele Di Palma

Università Campus Bio-MedicoORCID 0009-0006-0928-5892Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:simulation· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Blerina SinaimeriiD· 2 shared Catherine MatiasiD· 2 shared Laurent JacobiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBioinformatics

Blerina SinaimeriORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 30, 2026

Fox: Predicting rates of host-symbiont co-evolution events with association-aware attention

Gabriele Di Palma, Laurent Jacob, Catherine Matias, Blerina Sinaimeri

Fox predicts host-symbiont co-evolution event rates directly from sequence alignments without tree reconstruction, achieving high accuracy and speed compared to existing methods.

DOI 10.64898/2026.10.29.762770

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 17, 2026

Cophylogeny simulators are not interchangeable: similarities, differences and structural biases in synthetic host-symbiont

Gabriele Di Palma, Catherine Matias, Blerina Sinaimeri

The paper analyzes cophylogeny simulators to compare their assumptions and structural biases in generating synthetic host-symbiont data.

DOI 10.64898/2026.09.13.751162

statistical modelsimulation

𝕏 PostBluesky