Author

C.S. Elder

Carnegie Mellon UniversityORCID 0009-0006-3818-3975Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:DNA methylation· 1 Approach:optimal transport· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Carl KingsfordiD· 2 shared Guillaume MarçaisiD· 1 shared Minh HoangiD· 1 shared Mohsen Ferdosi· 1 shared

Activity by Year

2024-2024 · peak 2/yr

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4 top collaborators · 4 mutual co-author links

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2 shared papersBioinformatics

Carl KingsfordORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedOct 17, 2024

k-nonical space: sketching with reverse complements

Guillaume Marçais, C.S. Elder, Carl Kingsford

The paper investigates the impact of using canonical k-mers in sketching methods for genomic sequences and proposes solutions to address resulting issues.

6 citations

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsLecture notes in computer sciencePeer-reviewedJan 1, 2024

A Scalable Optimization Algorithm for Solving the Beltway and Turnpike Problems with Uncertain Measurements

C.S. Elder, Minh Hoang, Mohsen Ferdosi, Carl Kingsford

This paper introduces a scalable optimization algorithm for solving the Beltway and Turnpike problems with uncertain measurements, showing improved accuracy and scalability on synthetic and partial digest data.

1 citation

optimal transportbenchmarking

𝕏 PostBluesky