Altaf Barelvi

This paper benchmarks 14 pathway reconstruction algorithms across 822 datasets using a standardized framework to evaluate performance, similarity, and computational efficiency.

ProteinWeaver visualizes protein networks in five model organisms, contextualizing proteins within biological processes using Gene Ontology terms and identifying network motifs and distances.

GRPhIN characterizes graphlets in mixed physical and regulatory interaction networks, revealing conserved and stress-specific patterns across species.