Author

Ahmed Mahir Sultan Rumi

Bangladesh University of Engineering and TechnologyORCID 0009-0006-7273-7417Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:multiple species· 1 Research Focus:sequence-to-function modeling· 1 Research Focus:software / tool· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Abdur RafiiD· 2 shared Md. Shamsuzzoha BayzidiD· 2 shared Sheikh Azizul HakimiD· 2 shared A. B. M. Alim Al IslamiD· 1 shared Adnan Ibney Faruq· 1 shared Debashmita SahaiD· 1 shared Md Toki TahmidiD· 1 shared Mst. Fahmida Sultana Naznin· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersEvolutionary Biology

Abdur RafiORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintApr 4, 2025

Highly Accurate Species Tree Inference from Orthologs and Paralogs through Scalable Quartet Amalgamation

Abdur Rafi, Ahmed Mahir Sultan Rumi, Sheikh Azizul Hakim, Md. Shamsuzzoha Bayzid

This paper introduces wQFM-GDL, a method for species tree inference that models gene duplication and loss, outperforming existing methods on large datasets.

DOI 10.1101/2025.04.04.647228

deep learningstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 14, 2025

DDS-E-Sim: A Transformer-based Probabilistic Generative Framework for Simulating Error-Prone DNA Sequences for DNA Data Storage

Mst. Fahmida Sultana Naznin, Swarup Sidhartho Mondol, Adnan Ibney Faruq…·A. B. M. Alim Al Islam

DDS-E-Sim simulates error-prone DNA sequences for DNA data storage, capturing both random and biased errors with high fidelity across different sequencing technologies.

DOI 10.1101/2025.02.14.637785

whole-genome sequencingtransformer / foundation model

𝕏 PostBluesky

Evolutionary BiologyBioinformatics AdvancesPeer-reviewedDec 26, 2024

wQFM-TREE: highly accurate and scalable quartet-based species tree inference from gene trees

Abdur Rafi, Ahmed Mahir Sultan Rumi, Sheikh Azizul Hakim…·Md. Shamsuzzoha Bayzid

This paper introduces wQFM-TREE, a method for species tree inference that improves accuracy and scalability over existing methods like ASTRAL and wQFM.

3 citations

multiple speciesdeep learning

𝕏 PostBluesky