Author

Sujung Crystal Shin

Icahn School of Medicine at Mount SinaiORCID 0009-0006-7382-6622Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Approach:graph neural network· 1 Approach:simulation· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Guo‐Cheng YuaniD· 2 shared Joselyn CháveziD· 2 shared Pei WangiD· 1 shared Shiwei ZhengiD· 1 shared Weijia FuiD· 1 shared Weiping MaiD· 1 shared Wen WangiD· 1 shared Xiaoyu SongiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Guo‐Cheng YuanORCID

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2 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedOct 15, 2025

sCCIgen: A high-fidelity spatially resolved transcriptomics data simulator for cell-cell interaction studies.

Xiaoyu Song, Joselyn Chávez, Weiping Ma…·Guo‐Cheng Yuan

sCCIgen generates synthetic spatial transcriptomics data with known cell-cell interaction features to evaluate analytical tools.

2 citations

spatial transcriptomicssimulation

𝕏 PostBluesky

GenomicsGenome biologyPeer-reviewedMay 8, 2025

Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis

Wen Wang, Shiwei Zheng, Sujung Crystal Shin…·Guo‐Cheng Yuan

ONTraC uses a graph neural network to analyze spatial transcriptomics data, improving trajectory reconstruction and revealing microenvironment-dependent changes in gene regulation and cell interactions during development.

9 citations

spatial transcriptomicsgraph neural network

𝕏 PostBluesky