Author

Sergey A. Shiryev

National Institutes of HealthORCID 0009-0007-2799-0111Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:statistical model· 2 Assay:metagenomics· 1 Approach:simulation· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Richa AgarwalaiD· 2 shared Aleksandr O. Morgulis· 1 shared Anastasia P. LitvintsevaiD· 1 shared D. Joseph SextoniD· 1 shared Elijah Kariem LoweiD· 1 shared John Phan· 1 shared Jorge E. Mario-VasqueziD· 1 shared Matthew Blumberg· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Richa AgarwalaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedMay 16, 2024

Indexing and searching petabyte-scale nucleotide resources

Sergey A. Shiryev, Richa Agarwala

Pebblescout indexes and searches petabyte-scale nucleotide resources to find relevant subsets of data, improving upon metadata-based and reference-based approaches.

43 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 30, 2023

Finding Candida auris in public metagenomic repositories

Jorge E. Mario-Vasquez, Ujwal R. Bagal, Elijah Kariem Lowe…·Nancy A. Chow

The paper identifies Candida auris sequences in public metagenomic datasets using a new pipeline and volunteer computing.

DOI 10.1101/2023.08.30.555569

metagenomicsstatistical model

𝕏 PostBluesky