Author

Shaohui Xie

Shenzhen UniversityORCID 0009-0007-5611-8066Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Approach:transformer / foundation model· 2 Organism:bacteria (other)· 1 Research Focus:deconvolution· 1 Assay:DNA methylation· 1 Organism:fungi (other)· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Ling LiuiD· 2 shared Zexuan ZhuiD· 2 shared Guohua WangiD· 1 shared Hongmei ZhangiD· 1 shared Jinlong WangiD· 1 shared Kun WangiD· 1 shared Lulu DingiD· 1 shared Lulu DingiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Ling LiuORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 25, 2026

NanoSimFormer: An end-to-end Transformer-based simulator for nanopore sequencing signal data

Shaohui Xie, Lulu Ding, Ling Liu, Zexuan Zhu

NanoSimFormer generates high-fidelity nanopore sequencing signals optimized for accurate basecalling, outperforming existing simulators across multiple datasets and tasks.

DOI 10.64898/2026.01.20.700442

humanbacteria (other)

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BioinformaticsbioRxivPreprintDec 18, 2025

Polus: a Transformer-based Soft-decision Codec Enhancement Platform for DNA Storage

Lulu Ding, Kun Wang, Hongmei Zhang…·Zexuan Zhu

Polus improves DNA storage reliability and efficiency by using a Transformer-based platform to reduce sequencing coverage and errors.

DOI 10.64898/2025.12.16.694663

DNA methylationwhole-genome sequencing

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