Author

Rohan Ferriols Alibutud

Temple UniversityORCID 0009-0008-2321-1341Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:phylogenetics / evolution· 1 Assay:protein sequence· 1 Approach:transformer / foundation model· 1

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Mohammad Erfan MowlaeiiD· 1 shared Sudhir KumariD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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Mohammad Erfan MowlaeiORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintMay 29, 2026

Species phylogenetics using intraprotein residue dependence inferred with protein foundation models

Rohan Ferriols Alibutud, Mohammad Erfan Mowlaei, Sudhir Kumar

This study compares RAM-NJ and SAM-NJ phylogenies using protein foundation models to reconstruct species relationships without conventional substitution models or multiple sequence alignments.

DOI 10.64898/2026.05.26.727927

protein sequencedeep learning

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