Author

James J Bannon

Courant Institute of Mathematical SciencesORCID 0009-0008-3567-3439Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Bud MishraiD· 2 shared Charles R. CantoriD· 1 shared Charles R. Cantor· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 2 mutual co-author links

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2 shared papersCancer Biology

Bud MishraORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintSep 4, 2024

A Graph Curvature-Based Pipeline for Discovering Immune Checkpoint Response Biomarkers

James J Bannon, Charles R. Cantor, Bud Mishra

This paper develops a graph curvature-based pipeline to identify immune checkpoint response biomarkers from tumor RNA-sequencing data using PPI networks and transfer learning.

1 citation

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintAug 8, 2024

Discrete Ollivier-Ricci Flow Finds Distinct Subpopulations of Patients Treated with PD-1 Inhibition

James J Bannon, Charles R. Cantor, Bud Mishra

This paper uses discrete Ollivier-Ricci Flow to cluster patients treated with PD-1 inhibition, revealing subpopulations with distinct survival curves and potential biomarkers.

DOI 10.1101/2024.08.08.606714

humanbulk RNA-seq

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