Author

Arash Khoeini

Simon Fraser UniversityORCID 0009-0008-7021-6815Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Colin C. CollinsiD· 1 shared Funda SariD· 1 shared Martin EsteriD· 1 shared Yen‐Yi LiniD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperCell Biology

Colin C. CollinsORCID

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1 paper

Recent·Most cited

Cell BiologyBioinformaticsPeer-reviewedMar 27, 2025

scMUSCL: Multi-Source Transfer Learning for Clustering scRNA-seq Data

Arash Khoeini, Funda Sar, Yen‐Yi Lin…·Martin Ester

scMUSCL improves scRNA-seq clustering by transferring knowledge from multiple annotated datasets without requiring batch correction or prior cluster number knowledge.

2 citations

scRNA-seqdeep learning

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