Author
Lawrence Berkeley National LaboratoryORCID 0009-0008-7596-8346Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Isabella Murray, Roniya Thapa Magar, Denish Piya…·Vivek K. Mutalik
This study identifies host factors critical for ssRNA and ssDNA phage infection in E. coli, revealing conserved dependencies and lineage-specific requirements.
Hemaa Selvakumar, Avery J. C. Noonan, Ella R. Rotman…·Vivek K. Mutalik
This paper constructs a phage-bacteria interaction atlas for Klebsiella pneumoniae and develops a genome-guided machine learning model to predict phage-host interactions, outperforming traditional methods.
Marissa R. Gittrich, Courtney M. Sanderson, Cara M. Noel…·Matthew B. Sullivan
This study identifies 42 bacterial genes involved in Klebsiella phage infection using RB-TnSeq, revealing cross-family resistance and genus-specific gene dependencies.
Denish Piya, Avery J. C. Noonan, Hemaa Selvakumar…·Vivek K. Mutalik
The paper develops a genome-based framework to predict bacteriophage infectivity against diverse Pseudomonas aeruginosa strains using machine learning and experimental data.
Lucas Morinière, Avery J. C. Noonan, Alexey E. Kazakov…·Adam P. Arkin
The paper predicts phage receptor specificity from genome data using large-scale genetic screens and machine learning, achieving high accuracy for E. coli phages.
Avery J. C. Noonan, Lucas Morinière, Edwin Omar Rivera-Lopez…·Adam P. Arkin
This paper develops a machine learning framework to predict strain-level phage-host interactions from genomes, achieving high accuracy without phylogenetic constraints.