Shubai Chen

Cell-Graph Compass (CGC) is a foundation model that uses graph structures to represent single cells, capturing multiple biological perspectives and achieving state-of-the-art results in downstream tasks.

scCompass provides a cross-species scRNA-seq database with standardized preprocessing, enabling AI-ready data for research and analysis.

GeneCompass is a cross-species foundation model pre-trained on single-cell transcriptomes from human and mouse, integrating biological knowledge to improve gene regulatory mechanism understanding and downstream tasks.