Author

Cong Li

Chinese Academy of SciencesORCID 0000-0002-7121-3930Unclaimed ORCID profile · follow to get notified of new preprints

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Cong Li4 papers · Arizona State University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:benchmark study· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Organism:mouse· 1

Frequent Co-Authors

Guihai FengiD· 2 shared Guole LiuiD· 2 shared Haiping JiangiD· 2 shared Qingqing LongiD· 2 shared Shubai CheniD· 2 shared Xin LiiD· 2 shared Yana LiuiD· 2 shared Yuanchun ZhouiD· 2 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Guihai FengORCID

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2 papers

Recent·Most cited

Cell-Graph Compass: Modeling Single Cells with Graph Structure Foundation Model

Chen Fang, Wentao Cui, Zhilong Hu, Wenhao Liu, Shubai Chen, Shaole Chang, Qingqing Long, Cong Li, Yana Liu, Haiping Jiang, Pengfei Wang, Jia Pan, Guoping Hu, Guole Liu, Zhen Meng, , Xin Li

Cell-Graph Compass (CGC) is a foundation model that uses graph structures to represent single cells, capturing multiple biological perspectives and achieving state-of-the-art results in downstream tasks.

National Science Review · Jun 24, 2025Peer-reviewedBioinformatics

GeneCompass: Deciphering Universal Gene Regulatory Mechanisms with Knowledge-Informed Cross-Species Foundation Model

Xiaodong Yang, Guole Liu, Guihai Feng, Dechao Bu, Pengfei Wang, Jie Jiang, Shubai Chen, Qinmeng Yang, Hefan Miao, Yiyang Zhang, Zhenpeng Man, Zhongming Liang, Zichen Wang, Yaning Li, Zheng Li, , Zeyuan Zhang

GeneCompass is a cross-species foundation model pre-trained on single-cell transcriptomes from human and mouse, integrating biological knowledge to improve gene regulatory mechanism understanding and downstream tasks.

Cell Research · Oct 7, 2024Peer-reviewedBioinformatics